MBIO 4833, Fall 2017

Molecular Biology

Course Description

Focus on microbial isolation and characterization.

MBIO 5810-004, Spring 2017

Bioinformatics Demystified

Course Description

Focus on microbial isolation and characterization.

Amplicon Based Microbial Community Analysis

Prerequisites: Linux with QIIME (>v1.8), USEARCH (v9),

Shotgun Metagenomics

Prerequisites:Linux, Ray-meta, Bowtie2/BWA, Samtools, picard-tools, vcfutils, Reference Databases (NCBI, KEGG, COG, PFAM)

Reference Based Genome Assembly

Prerequisites:Linux, Bowtie2/BWA, Samtools, picard-tools, vcfutils

Denovo Genome Assembly

Prerequisites:Linux, Ray-meta, Bowtie2/BWA, Samtools, picard-tools, vcfutils, Reference Databases (NCBI, KEGG, COG, PFAM), Binning tools (Concoct, MetaBat, LSA)